Lookup-Symbol
Lookup information for genes/transcripts providing symbols and species
Arguments
| Name | Short | Long | Description |
|---|---|---|---|
| Species | -s | --species | Species to specify [default: homo_sapiens] |
| IDs | -i | --ids | Return a minimal output of only the found Ensembl IDs |
| Output | -o | --output | optional filepath to write output to [default=stdout] |
Usage
# Query information for AP2S1
ggetrs ensembl lookup-symbol AP2S1
# Query information for AP2S1 and NSD1
ggetrs ensembl lookup-symbol AP2S1 NSD1
# Query information for AP2S1 and NSD1 in mice
ggetrs ensembl lookup-symbol -s mus_musculus AP2S1 NSD1
# Query information for AP2S1 and NSD1 but only return Ensembl IDs
# (useful for translating between Ensembl IDs and gene symbols)
ggetrs ensembl lookup-symbol -i AP2S1 NSD1