Correlate
Performs a gene-correlation analysis using ARCHS4.
Arguments
| Name | Short | Long | Description |
|---|---|---|---|
| Count | -c | --count | number of values to recover [default: 100] |
| Output | -o | --output | optional filepath to write output to [default=stdout] |
Command Line Interface
# Perform a gene-correlation analysis with ARCHS4
ggetrs archs4 correlate AP2S1
# Perform a gene-correlation analysis with ARCHS4
# But only return the top 10 results
ggetrs archs4 correlate -c 10 AP2S1
Python
import ggetrs
# Perform a gene-correlation analysis for AP2S1
# and return the top 10 results
ggetrs.archs4.correlate("AP2S1", 10)
# Perform a gene-correlation analysis for AP2S1
# and return the top 100 results
ggetrs.archs4.correlate("AP2S1", 100)