Database

Prints all available databases on Ensembl's SQL server.

This is used if you are interested in querying a specific database and can be passed into ggetrs search.

Arguments

Name	Short	Long	Description
Filter	`-f`	`--filter`	Provides a substring filter to only return databases which contain the substring
Output	`-o`	`--output`	optional filepath to write output to [default=stdout]

Command Line Interface

# show all databases in the SQL server
ggetrs ensembl database

# filter for databases with the `sapiens` substring
ggetrs ensembl database -f sapiens

# filter for databases with the `cerevisiae` substring
ggetrs ensembl database -f cerevisiae

Python

import ggetrs

# show all databases in the SQL server
ggetrs.ensembl.database()

# filter for databases with the `sapiens` substring
ggetrs.ensembl.database("sapiens")

# filter for databases with the `cerevisiae` substring
ggetrs.ensembl.database("cerevisiae")