Visualization

Now we come to the best part - looking at your results!

If you're proficient in python or R this step can be skipped and you can roll your own visualization method with the results.gene_results.tab and results.sgrna_results.tab dataframes.

But if you're looking for a quick visualization toolkit you can use my tool screenviz

Installation

You can install it straight from github with the python package manager pip

pip install git+https://github.com/noamteyssier/screenviz

Usage

Gene Analysis

To visualize your gene-level results you can use the screenviz gene subcommand:

screenviz gene -i results.gene_results.tab

This will write the visualization to a file gene_volcano.html which you can open in your favorite browser to interact with:

firefox gene_volcano.html

sgRNA Analysis

To visualize your sgrna-level results you can use the screenviz sgrna subcommand:

screenviz sgrna -i results.sgrna_results.tab

This will write the visualization to a file sgrna_volcano.html which you can open in your favorite browser to intract with:

firefox sgrna_volcano.html