[ fxtools unique ]

Summary

This is a command that will determine all unique sequences within a fastx file and split the records into either unique or duplicates. It will also count the number of unique/duplicate sequences/duplicate records and report those.

Parameters

By default all unique reads will be pushed to stdout unless piped to a file with the -o flag. Nulled reads will not be reported by default but can be written to a filepath with the -n flag.

Usage

fxtools unique \
  -i <input_fastx> \
  -o <optional_output_file_for_unique> \
  -n <optional_output_file_for_null>