[ fxtools reverse ]

Summary

This command will convert your input fastx into an output fastx with all nucleotide sequences (and associated quality scores) in in reverse order.

Useful for grep for a sequence in R2 or vice versa.

Expected Input

This will reverse complement each of the sequences and potential quality scores.

ACTG
GCTA
AAAA

Expected Output

CAGT
TAGC
TTTT

Usage

fxtools reverse -i <your_fwd.fq.gz>